J4_6ZMI_008

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6ZMI|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|G|2618
6ZMI|1|L5|G|2619
*
6ZMI|1|L5|U|2637
6ZMI|1|L5|G|2638
6ZMI|1|L5|U|2639
6ZMI|1|L5|G|2640
6ZMI|1|L5|A|2641
6ZMI|1|L5|A|2642
*
6ZMI|1|L5|U|2692
6ZMI|1|L5|G|2693
6ZMI|1|L5|G|2694
6ZMI|1|L5|A|2695
6ZMI|1|L5|A|2696
6ZMI|1|L5|A|2697
6ZMI|1|L5|G|2698
*
6ZMI|1|L5|U|2718
6ZMI|1|L5|C|2719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38