J4_6ZMI_013

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

6ZMI|1|L5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|G|4587
6ZMI|1|L5|U|4588
6ZMI|1|L5|A|4589
6ZMI|1|L5|A|4590
*
6ZMI|1|L5|U|4620
6ZMI|1|L5|C|4621
*
6ZMI|1|L5|G|4676
6ZMI|1|L5|U|4677
6ZMI|1|L5|G|4678
*
6ZMI|1|L5|C|4712
6ZMI|1|L5|G|4713
6ZMI|1|L5|C|4714
6ZMI|1|L5|C|4715

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23