J4_6ZMO_010

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZMO|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZMO_010 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0974

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|3696
6ZMO|1|L5|U|3697
6ZMO|1|L5|G|3698
*
6ZMO|1|L5|C|3752
6ZMO|1|L5|G|3753
*
6ZMO|1|L5|C|3771
6ZMO|1|L5|U|3772
6ZMO|1|L5|U|3773
6ZMO|1|L5|A|3774
6ZMO|1|L5|A|3775
6ZMO|1|L5|G|3776
6ZMO|1|L5|G|3777
6ZMO|1|L5|U|3778
6ZMO|1|L5|A|3779
6ZMO|1|L5|G|3780
*
6ZMO|1|L5|U|3814
6ZMO|1|L5|G|3815
6ZMO|1|L5|A|3816
6ZMO|1|L5|A|3817
6ZMO|1|L5|U|3818
6ZMO|1|L5|G|3819

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA