J4_6ZMO_015

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

6ZMO|1|L5|G|1271, 6ZMO|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|981
6ZMO|1|L5|U|982
6ZMO|1|L5|C|983
*
6ZMO|1|L5|G|1070
6ZMO|1|L5|C|1071
6ZMO|1|L5|C|1072
*
6ZMO|1|L5|G|1240
6ZMO|1|L5|C|1241
6ZMO|1|L5|G|1242
6ZMO|1|L5|C|1243
*
6ZMO|1|L5|G|1268
6ZMO|1|L5|G|1269
6ZMO|1|L5|A|1270
6ZMO|1|L5|G|1271
6ZMO|1|L5|C|1272
6ZMO|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29