J4_6ZP4_001
3D structure
- PDB id
- 6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6ZP4|1|1|U|8, 6ZP4|1|1|U|47, 6ZP4|1|1|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZP4_001 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1625
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6ZP4|1|1|G|7
6ZP4|1|1|U|8
6ZP4|1|1|A|9
6ZP4|1|1|G|10
*
6ZP4|1|1|U|25
6ZP4|1|1|G|26
6ZP4|1|1|C|27
*
6ZP4|1|1|G|43
6ZP4|1|1|A|44
6ZP4|1|1|G|45
6ZP4|1|1|G|46
6ZP4|1|1|U|47
6ZP4|1|1|C|48
6ZP4|1|1|G|49
*
6ZP4|1|1|C|65
6ZP4|1|1|C|66
Current chains
- Chain 1
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Eukaryotic translation initiation factor 2 subunit 2
- Chain O
- Eukaryotic translation initiation factor 2 subunit 1
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