J4_6ZS9_007

3D structure

PDB id

6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with ribosome recycling factor

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZS9|1|XA|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZS9_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1626

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6ZS9|1|XA|C|2544
6ZS9|1|XA|U|2545
6ZS9|1|XA|G|2546
*
6ZS9|1|XA|C|2569
6ZS9|1|XA|C|2570
*
6ZS9|1|XA|G|2587
6ZS9|1|XA|C|2588
6ZS9|1|XA|A|2589
6ZS9|1|XA|A|2590
6ZS9|1|XA|A|2591
6ZS9|1|XA|G|2592
6ZS9|1|XA|G|2593
6ZS9|1|XA|U|2594
6ZS9|1|XA|A|2595
6ZS9|1|XA|G|2596
*
6ZS9|1|XA|U|2630
6ZS9|1|XA|G|2631
6ZS9|1|XA|A|2632
6ZS9|1|XA|A|2633
6ZS9|1|XA|U|2634
6ZS9|1|XA|G|2635

Current chains

Chain XA

16S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial