J4_6ZSD_007

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZSD|1|XA|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZSD_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1569

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ZSD|1|XA|C|2544
6ZSD|1|XA|U|2545
6ZSD|1|XA|G|2546
*
6ZSD|1|XA|C|2569
6ZSD|1|XA|C|2570
*
6ZSD|1|XA|G|2587
6ZSD|1|XA|C|2588
6ZSD|1|XA|A|2589
6ZSD|1|XA|A|2590
6ZSD|1|XA|A|2591
6ZSD|1|XA|G|2592
6ZSD|1|XA|G|2593
6ZSD|1|XA|U|2594
6ZSD|1|XA|A|2595
6ZSD|1|XA|G|2596
*
6ZSD|1|XA|U|2630
6ZSD|1|XA|G|2631
6ZSD|1|XA|A|2632
6ZSD|1|XA|A|2633
6ZSD|1|XA|U|2634
6ZSD|1|XA|G|2635

Current chains

Chain XA

16S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial