J4_6ZSE_008

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZSE|1|XA|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZSE_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1668

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ZSE|1|XA|C|2544
6ZSE|1|XA|U|2545
6ZSE|1|XA|G|2546
*
6ZSE|1|XA|C|2569
6ZSE|1|XA|C|2570
*
6ZSE|1|XA|G|2587
6ZSE|1|XA|C|2588
6ZSE|1|XA|A|2589
6ZSE|1|XA|A|2590
6ZSE|1|XA|A|2591
6ZSE|1|XA|G|2592
6ZSE|1|XA|G|2593
6ZSE|1|XA|U|2594
6ZSE|1|XA|A|2595
6ZSE|1|XA|G|2596
*
6ZSE|1|XA|U|2630
6ZSE|1|XA|G|2631
6ZSE|1|XA|A|2632
6ZSE|1|XA|A|2633
6ZSE|1|XA|U|2634
6ZSE|1|XA|G|2635

Current chains

Chain XA

16S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial