J4_6ZSG_007

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZSG|1|XA|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZSG_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1591

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ZSG|1|XA|C|2544
6ZSG|1|XA|U|2545
6ZSG|1|XA|G|2546
*
6ZSG|1|XA|C|2569
6ZSG|1|XA|C|2570
*
6ZSG|1|XA|G|2587
6ZSG|1|XA|C|2588
6ZSG|1|XA|A|2589
6ZSG|1|XA|A|2590
6ZSG|1|XA|A|2591
6ZSG|1|XA|G|2592
6ZSG|1|XA|G|2593
6ZSG|1|XA|U|2594
6ZSG|1|XA|A|2595
6ZSG|1|XA|G|2596
*
6ZSG|1|XA|U|2630
6ZSG|1|XA|G|2631
6ZSG|1|XA|A|2632
6ZSG|1|XA|A|2633
6ZSG|1|XA|U|2634
6ZSG|1|XA|G|2635

Current chains

Chain XA

16S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial