J4_6ZTJ_003

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6ZTJ|1|AA|C|576, 6ZTJ|1|AA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTJ_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0702

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6ZTJ|1|AA|G|575
6ZTJ|1|AA|C|576
6ZTJ|1|AA|G|577
*
6ZTJ|1|AA|C|764
6ZTJ|1|AA|G|765
6ZTJ|1|AA|A|766
6ZTJ|1|AA|A|767
6ZTJ|1|AA|A|768
6ZTJ|1|AA|G|769
*
6ZTJ|1|AA|C|810
6ZTJ|1|AA|C|811
6ZTJ|1|AA|G|812
6ZTJ|1|AA|U|813
6ZTJ|1|AA|A|814
6ZTJ|1|AA|A|815
6ZTJ|1|AA|A|816
6ZTJ|1|AA|C|817
6ZTJ|1|AA|G|818
6ZTJ|1|AA|A|819
6ZTJ|1|AA|U|820
6ZTJ|1|AA|G|821
*
6ZTJ|1|AA|C|879
6ZTJ|1|AA|C|880

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AK

30S ribosomal protein S11

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17

Chain AU

30S ribosomal protein S21

Chain BA

Large subunit ribosomal RNA; LSU rRNA