J4_6ZTJ_008

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6ZTJ|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTJ_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.212

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTJ|1|BA|C|601
6ZTJ|1|BA|A|602
6ZTJ|1|BA|A|603
6ZTJ|1|BA|G|604
*
6ZTJ|1|BA|C|624
6ZTJ|1|BA|G|625
6ZTJ|1|BA|A|626
6ZTJ|1|BA|A|627
6ZTJ|1|BA|G|628
*
6ZTJ|1|BA|C|635
6ZTJ|1|BA|G|636
6ZTJ|1|BA|A|637
6ZTJ|1|BA|G|638
*
6ZTJ|1|BA|C|650
6ZTJ|1|BA|G|651
6ZTJ|1|BA|U|652
6ZTJ|1|BA|U|653
6ZTJ|1|BA|A|654
6ZTJ|1|BA|A|655
6ZTJ|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15