J4_6ZTJ_014

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6ZTJ|1|BA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTJ_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.089

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ZTJ|1|BA|C|1833
6ZTJ|1|BA|U|1834
6ZTJ|1|BA|2MG|1835
*
6ZTJ|1|BA|C|1905
6ZTJ|1|BA|G|1906
*
6ZTJ|1|BA|C|1924
6ZTJ|1|BA|C|1925
6ZTJ|1|BA|U|1926
6ZTJ|1|BA|A|1927
6ZTJ|1|BA|A|1928
6ZTJ|1|BA|G|1929
6ZTJ|1|BA|G|1930
6ZTJ|1|BA|U|1931
6ZTJ|1|BA|A|1932
6ZTJ|1|BA|G|1933
*
6ZTJ|1|BA|C|1967
6ZTJ|1|BA|G|1968
6ZTJ|1|BA|A|1969
6ZTJ|1|BA|A|1970
6ZTJ|1|BA|U|1971
6ZTJ|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2