J4_6ZTL_008

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTL_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1624

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTL|1|BA|C|601
6ZTL|1|BA|A|602
6ZTL|1|BA|A|603
6ZTL|1|BA|G|604
*
6ZTL|1|BA|C|624
6ZTL|1|BA|G|625
6ZTL|1|BA|A|626
6ZTL|1|BA|A|627
6ZTL|1|BA|G|628
*
6ZTL|1|BA|C|635
6ZTL|1|BA|G|636
6ZTL|1|BA|A|637
6ZTL|1|BA|G|638
*
6ZTL|1|BA|C|650
6ZTL|1|BA|G|651
6ZTL|1|BA|U|652
6ZTL|1|BA|U|653
6ZTL|1|BA|A|654
6ZTL|1|BA|A|655
6ZTL|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15