3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6ZTM|1|AA|C|576, 6ZTM|1|AA|A|815, 6ZTM|1|AA|C|817, 6ZTM|1|AA|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTM_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0648
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6ZTM|1|AA|G|575
6ZTM|1|AA|C|576
6ZTM|1|AA|G|577
*
6ZTM|1|AA|C|764
6ZTM|1|AA|G|765
6ZTM|1|AA|A|766
6ZTM|1|AA|A|767
6ZTM|1|AA|A|768
6ZTM|1|AA|G|769
*
6ZTM|1|AA|C|810
6ZTM|1|AA|C|811
6ZTM|1|AA|G|812
6ZTM|1|AA|U|813
6ZTM|1|AA|A|814
6ZTM|1|AA|A|815
6ZTM|1|AA|A|816
6ZTM|1|AA|C|817
6ZTM|1|AA|G|818
6ZTM|1|AA|A|819
6ZTM|1|AA|U|820
6ZTM|1|AA|G|821
*
6ZTM|1|AA|C|879
6ZTM|1|AA|C|880

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AK
30S ribosomal protein S11
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17
Chain AU
30S ribosomal protein S21
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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