J4_6ZTM_008

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTM_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2495

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTM|1|BA|C|601
6ZTM|1|BA|A|602
6ZTM|1|BA|A|603
6ZTM|1|BA|G|604
*
6ZTM|1|BA|C|624
6ZTM|1|BA|G|625
6ZTM|1|BA|A|626
6ZTM|1|BA|A|627
6ZTM|1|BA|G|628
*
6ZTM|1|BA|C|635
6ZTM|1|BA|G|636
6ZTM|1|BA|A|637
6ZTM|1|BA|G|638
*
6ZTM|1|BA|C|650
6ZTM|1|BA|G|651
6ZTM|1|BA|U|652
6ZTM|1|BA|U|653
6ZTM|1|BA|A|654
6ZTM|1|BA|A|655
6ZTM|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15