J4_6ZTM_010
3D structure
- PDB id
- 6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in collided state without NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6ZTM|1|BA|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZTM_010 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0738
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZTM|1|BA|G|1310
6ZTM|1|BA|G|1311
6ZTM|1|BA|U|1312
6ZTM|1|BA|U|1313
6ZTM|1|BA|C|1314
*
6ZTM|1|BA|G|1338
6ZTM|1|BA|G|1339
6ZTM|1|BA|U|1340
6ZTM|1|BA|G|1341
6ZTM|1|BA|A|1342
6ZTM|1|BA|G|1343
*
6ZTM|1|BA|C|1404
6ZTM|1|BA|U|1405
*
6ZTM|1|BA|A|1597
6ZTM|1|BA|A|1598
6ZTM|1|BA|U|1599
6ZTM|1|BA|C|1600
6ZTM|1|BA|G|1601
6ZTM|1|BA|U|1602
6ZTM|1|BA|A|1603
6ZTM|1|BA|C|1604
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B4
- 50S ribosomal protein L34
- Chain BU
- 50S ribosomal protein L23
Coloring options: