3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
6ZTM|1|BA|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTM_010 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0738
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6ZTM|1|BA|G|1310
6ZTM|1|BA|G|1311
6ZTM|1|BA|U|1312
6ZTM|1|BA|U|1313
6ZTM|1|BA|C|1314
*
6ZTM|1|BA|G|1338
6ZTM|1|BA|G|1339
6ZTM|1|BA|U|1340
6ZTM|1|BA|G|1341
6ZTM|1|BA|A|1342
6ZTM|1|BA|G|1343
*
6ZTM|1|BA|C|1404
6ZTM|1|BA|U|1405
*
6ZTM|1|BA|A|1597
6ZTM|1|BA|A|1598
6ZTM|1|BA|U|1599
6ZTM|1|BA|C|1600
6ZTM|1|BA|G|1601
6ZTM|1|BA|U|1602
6ZTM|1|BA|A|1603
6ZTM|1|BA|C|1604

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain BU
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3533 s