J4_6ZTN_009

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTN_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1892

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTN|1|BA|C|601
6ZTN|1|BA|A|602
6ZTN|1|BA|A|603
6ZTN|1|BA|G|604
*
6ZTN|1|BA|C|624
6ZTN|1|BA|G|625
6ZTN|1|BA|A|626
6ZTN|1|BA|A|627
6ZTN|1|BA|G|628
*
6ZTN|1|BA|C|635
6ZTN|1|BA|G|636
6ZTN|1|BA|A|637
6ZTN|1|BA|G|638
*
6ZTN|1|BA|C|650
6ZTN|1|BA|G|651
6ZTN|1|BA|U|652
6ZTN|1|BA|U|653
6ZTN|1|BA|A|654
6ZTN|1|BA|A|655
6ZTN|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15