J4_6ZTO_014

3D structure

PDB id

6ZTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6ZTO|1|BA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTO_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0896

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ZTO|1|BA|C|1833
6ZTO|1|BA|U|1834
6ZTO|1|BA|2MG|1835
*
6ZTO|1|BA|C|1905
6ZTO|1|BA|G|1906
*
6ZTO|1|BA|C|1924
6ZTO|1|BA|C|1925
6ZTO|1|BA|U|1926
6ZTO|1|BA|A|1927
6ZTO|1|BA|A|1928
6ZTO|1|BA|G|1929
6ZTO|1|BA|G|1930
6ZTO|1|BA|U|1931
6ZTO|1|BA|A|1932
6ZTO|1|BA|G|1933
*
6ZTO|1|BA|C|1967
6ZTO|1|BA|G|1968
6ZTO|1|BA|A|1969
6ZTO|1|BA|A|1970
6ZTO|1|BA|U|1971
6ZTO|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2