3D structure

PDB id
6ZTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 6
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6ZTP|1|AA|C|576, 6ZTP|1|AA|A|815, 6ZTP|1|AA|C|817, 6ZTP|1|AA|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTP_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0582
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6ZTP|1|AA|G|575
6ZTP|1|AA|C|576
6ZTP|1|AA|G|577
*
6ZTP|1|AA|C|764
6ZTP|1|AA|G|765
6ZTP|1|AA|A|766
6ZTP|1|AA|A|767
6ZTP|1|AA|A|768
6ZTP|1|AA|G|769
*
6ZTP|1|AA|C|810
6ZTP|1|AA|C|811
6ZTP|1|AA|G|812
6ZTP|1|AA|U|813
6ZTP|1|AA|A|814
6ZTP|1|AA|A|815
6ZTP|1|AA|A|816
6ZTP|1|AA|C|817
6ZTP|1|AA|G|818
6ZTP|1|AA|A|819
6ZTP|1|AA|U|820
6ZTP|1|AA|G|821
*
6ZTP|1|AA|C|879
6ZTP|1|AA|C|880

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17
Chain AU
30S ribosomal protein S21
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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