J4_6ZTP_008

3D structure

PDB id

6ZTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 6

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTP_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1571

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTP|1|BA|C|601
6ZTP|1|BA|A|602
6ZTP|1|BA|A|603
6ZTP|1|BA|G|604
*
6ZTP|1|BA|C|624
6ZTP|1|BA|G|625
6ZTP|1|BA|A|626
6ZTP|1|BA|A|627
6ZTP|1|BA|G|628
*
6ZTP|1|BA|C|635
6ZTP|1|BA|G|636
6ZTP|1|BA|A|637
6ZTP|1|BA|G|638
*
6ZTP|1|BA|C|650
6ZTP|1|BA|G|651
6ZTP|1|BA|U|652
6ZTP|1|BA|U|653
6ZTP|1|BA|A|654
6ZTP|1|BA|A|655
6ZTP|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15