J4_6ZU1_008

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU1_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1571

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZU1|1|BA|C|601
6ZU1|1|BA|A|602
6ZU1|1|BA|A|603
6ZU1|1|BA|G|604
*
6ZU1|1|BA|C|624
6ZU1|1|BA|G|625
6ZU1|1|BA|A|626
6ZU1|1|BA|A|627
6ZU1|1|BA|G|628
*
6ZU1|1|BA|C|635
6ZU1|1|BA|G|636
6ZU1|1|BA|A|637
6ZU1|1|BA|G|638
*
6ZU1|1|BA|C|650
6ZU1|1|BA|G|651
6ZU1|1|BA|U|652
6ZU1|1|BA|U|653
6ZU1|1|BA|A|654
6ZU1|1|BA|A|655
6ZU1|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15