J4_6ZVH_003

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCUUGGGAGCGGGCGUCCCCGCCC*GCAUU*AUGGAAUAGG*CAUGAU

Length

46 nucleotides

Bulged bases

6ZVH|1|2|C|687, 6ZVH|1|2|G|696, 6ZVH|1|2|G|697, 6ZVH|1|2|G|698, 6ZVH|1|2|C|730, 6ZVH|1|2|G|731, 6ZVH|1|2|U|732, 6ZVH|1|2|C|733, 6ZVH|1|2|C|734, 6ZVH|1|2|C|735, 6ZVH|1|2|A|798, 6ZVH|1|2|U|871, 6ZVH|1|2|G|873, 6ZVH|1|2|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVH|1|2|A|685
6ZVH|1|2|U|686
6ZVH|1|2|C|687
6ZVH|1|2|U|688
6ZVH|1|2|U|689
6ZVH|1|2|G|690
6ZVH|1|2|G|691
6ZVH|1|2|G|692
6ZVH|1|2|A|693
6ZVH|1|2|G|694
6ZVH|1|2|C|695
6ZVH|1|2|G|696
6ZVH|1|2|G|697
6ZVH|1|2|G|698
6ZVH|1|2|C|730
6ZVH|1|2|G|731
6ZVH|1|2|U|732
6ZVH|1|2|C|733
6ZVH|1|2|C|734
6ZVH|1|2|C|735
6ZVH|1|2|C|736
6ZVH|1|2|G|737
6ZVH|1|2|C|738
6ZVH|1|2|C|739
6ZVH|1|2|C|746
*
6ZVH|1|2|G|796
6ZVH|1|2|C|797
6ZVH|1|2|A|798
6ZVH|1|2|U|799
6ZVH|1|2|U|800
*
6ZVH|1|2|A|865
6ZVH|1|2|U|866
6ZVH|1|2|G|867
6ZVH|1|2|G|868
6ZVH|1|2|A|869
6ZVH|1|2|A|870
6ZVH|1|2|U|871
6ZVH|1|2|A|872
6ZVH|1|2|G|873
6ZVH|1|2|G|874
*
6ZVH|1|2|C|912
6ZVH|1|2|A|913
6ZVH|1|2|U|914
6ZVH|1|2|G|915
6ZVH|1|2|A|916
6ZVH|1|2|U|917

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain H

40S ribosomal protein S7

Chain L

40S ribosomal protein S11

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain X

40S ribosomal protein S23