J4_6ZVJ_002
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGUUAAAAAGCU*AACGAAAG*CCAUAAACGAUGC*GUUCCG
- Length
- 40 nucleotides
- Bulged bases
- 6ZVJ|1|2|A|668, 6ZVJ|1|2|A|672, 6ZVJ|1|2|A|1083, 6ZVJ|1|2|C|1085, 6ZVJ|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVJ|1|2|C|663
6ZVJ|1|2|A|664
6ZVJ|1|2|G|665
6ZVJ|1|2|U|666
6ZVJ|1|2|U|667
6ZVJ|1|2|A|668
6ZVJ|1|2|A|669
6ZVJ|1|2|A|670
6ZVJ|1|2|A|671
6ZVJ|1|2|A|672
6ZVJ|1|2|G|673
6ZVJ|1|2|C|674
6ZVJ|1|2|U|675
*
6ZVJ|1|2|A|1030
6ZVJ|1|2|A|1031
6ZVJ|1|2|C|1032
6ZVJ|1|2|G|1033
6ZVJ|1|2|A|1034
6ZVJ|1|2|A|1035
6ZVJ|1|2|A|1036
6ZVJ|1|2|G|1037
*
6ZVJ|1|2|C|1078
6ZVJ|1|2|C|1079
6ZVJ|1|2|A|1080
6ZVJ|1|2|U|1081
6ZVJ|1|2|A|1082
6ZVJ|1|2|A|1083
6ZVJ|1|2|A|1084
6ZVJ|1|2|C|1085
6ZVJ|1|2|G|1086
6ZVJ|1|2|A|1087
6ZVJ|1|2|U|1088
6ZVJ|1|2|G|1089
6ZVJ|1|2|C|1090
*
6ZVJ|1|2|G|1159
6ZVJ|1|2|U|1160
6ZVJ|1|2|U|1161
6ZVJ|1|2|C|1162
6ZVJ|1|2|C|1163
6ZVJ|1|2|G|1164
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C
- Chain Q
- 40S ribosomal protein S26
- Chain W
- 60S ribosomal protein L41
- Chain d
- 40S ribosomal protein S2
- Chain f
- 40S ribosomal protein S15a
- Chain i
- 40S ribosomal protein S14
- Chain j
- 40S ribosomal protein S23
- Chain m
- 40S ribosomal protein S13
- Chain n
- 40S ribosomal protein S11
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