J4_6ZVK_001
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZVK_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1156
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|C|98
6ZVK|1|K3|A|99
6ZVK|1|K3|U|100
6ZVK|1|K3|U|101
6ZVK|1|K3|A|102
6ZVK|1|K3|A|103
6ZVK|1|K3|A|104
6ZVK|1|K3|U|105
6ZVK|1|K3|C|106
*
6ZVK|1|K3|G|355
6ZVK|1|K3|C|356
6ZVK|1|K3|C|357
*
6ZVK|1|K3|G|405
6ZVK|1|K3|U|406
6ZVK|1|K3|G|407
6ZVK|1|K3|A|408
6ZVK|1|K3|C|409
*
6ZVK|1|K3|G|431
6ZVK|1|K3|G|432
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain T3
- Ribosomal protein S23
- Chain c3
- 40S ribosomal protein S8
- Chain j3
- 40S ribosomal protein S4
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