J4_6ZVK_004

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6ZVK|1|e2|C|216, 6ZVK|1|e2|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|196
6ZVK|1|e2|A|197
6ZVK|1|e2|A|198
6ZVK|1|e2|G|199
*
6ZVK|1|e2|C|215
6ZVK|1|e2|C|216
6ZVK|1|e2|C|217
6ZVK|1|e2|A|218
6ZVK|1|e2|G|219
6ZVK|1|e2|C|220
6ZVK|1|e2|C|221
6ZVK|1|e2|C|222
*
6ZVK|1|e2|G|226
6ZVK|1|e2|A|227
6ZVK|1|e2|C|228
*
6ZVK|1|e2|G|240
6ZVK|1|e2|G|241
6ZVK|1|e2|U|242
6ZVK|1|e2|A|243
6ZVK|1|e2|G|244

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain o2

Ribosomal protein L26

Chain t2

uL4