J4_6ZVK_005

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUCUC*GCCG*CGCGCGC*GGCGGAGCGAG

Length

27 nucleotides

Bulged bases

6ZVK|1|e2|G|1268, 6ZVK|1|e2|C|1272, 6ZVK|1|e2|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|979
6ZVK|1|e2|U|980
6ZVK|1|e2|C|981
6ZVK|1|e2|U|982
6ZVK|1|e2|C|983
*
6ZVK|1|e2|G|1070
6ZVK|1|e2|C|1071
6ZVK|1|e2|C|1072
6ZVK|1|e2|G|1073
*
6ZVK|1|e2|C|1239
6ZVK|1|e2|G|1240
6ZVK|1|e2|C|1241
6ZVK|1|e2|G|1242
6ZVK|1|e2|C|1243
6ZVK|1|e2|G|1244
6ZVK|1|e2|C|1245
*
6ZVK|1|e2|G|1265
6ZVK|1|e2|G|1266
6ZVK|1|e2|C|1267
6ZVK|1|e2|G|1268
6ZVK|1|e2|G|1269
6ZVK|1|e2|A|1270
6ZVK|1|e2|G|1271
6ZVK|1|e2|C|1272
6ZVK|1|e2|G|1273
6ZVK|1|e2|A|1274
6ZVK|1|e2|G|1275

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein

Chain U2

uL30