J4_6ZVK_010

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

6ZVK|1|e2|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|3696
6ZVK|1|e2|U|3697
6ZVK|1|e2|G|3698
*
6ZVK|1|e2|C|3752
6ZVK|1|e2|G|3753
6ZVK|1|e2|G|3754
*
6ZVK|1|e2|U|3770
6ZVK|1|e2|C|3771
6ZVK|1|e2|U|3772
6ZVK|1|e2|U|3773
6ZVK|1|e2|A|3774
6ZVK|1|e2|A|3775
6ZVK|1|e2|G|3776
6ZVK|1|e2|G|3777
6ZVK|1|e2|U|3778
6ZVK|1|e2|A|3779
6ZVK|1|e2|G|3780
*
6ZVK|1|e2|U|3814
6ZVK|1|e2|G|3815
6ZVK|1|e2|A|3816
6ZVK|1|e2|A|3817
6ZVK|1|e2|U|3818
6ZVK|1|e2|G|3819

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41