J4_6ZVK_013

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6ZVK|1|e2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|2618
6ZVK|1|e2|G|2619
*
6ZVK|1|e2|U|2637
6ZVK|1|e2|G|2638
6ZVK|1|e2|U|2639
6ZVK|1|e2|G|2640
6ZVK|1|e2|A|2641
6ZVK|1|e2|A|2642
*
6ZVK|1|e2|U|2692
6ZVK|1|e2|G|2693
6ZVK|1|e2|G|2694
6ZVK|1|e2|A|2695
6ZVK|1|e2|A|2696
6ZVK|1|e2|A|2697
6ZVK|1|e2|G|2698
*
6ZVK|1|e2|U|2718
6ZVK|1|e2|C|2719

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 82

Ribosomal protein L22

Chain p2

60S RIBOSOMAL PROTEIN EL38

Chain y2

eL34