J4_6ZXH_001
3D structure
- PDB id
- 6ZXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6ZXH|1|2|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZXH_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.2407
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZXH|1|2|C|98
6ZXH|1|2|A2M|99
6ZXH|1|2|U|100
6ZXH|1|2|U|101
6ZXH|1|2|A|102
6ZXH|1|2|A|103
6ZXH|1|2|A|104
6ZXH|1|2|PSU|105
6ZXH|1|2|C|106
*
6ZXH|1|2|G|355
6ZXH|1|2|C|356
6ZXH|1|2|C|357
*
6ZXH|1|2|G|405
6ZXH|1|2|PSU|406
6ZXH|1|2|G|407
6ZXH|1|2|A|408
6ZXH|1|2|C|409
*
6ZXH|1|2|G|431
6ZXH|1|2|G|432
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain I
- 40S ribosomal protein S8
- Chain L
- 40S ribosomal protein S11
- Chain X
- 40S ribosomal protein S23
Coloring options: