3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
Length
30 nucleotides
Bulged bases
7A01|1|K3|A|672
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7A01|1|K3|G|665
7A01|1|K3|U|666
7A01|1|K3|U|667
7A01|1|K3|A|668
7A01|1|K3|A|669
7A01|1|K3|A|670
7A01|1|K3|A|671
7A01|1|K3|A|672
7A01|1|K3|G|673
*
7A01|1|K3|C|1032
7A01|1|K3|G|1033
7A01|1|K3|A|1034
7A01|1|K3|A|1035
7A01|1|K3|A|1036
7A01|1|K3|G|1037
*
7A01|1|K3|C|1078
7A01|1|K3|C|1079
7A01|1|K3|A|1080
7A01|1|K3|U|1081
7A01|1|K3|A|1082
7A01|1|K3|A|1083
7A01|1|K3|A|1084
7A01|1|K3|C|1085
7A01|1|K3|G|1086
7A01|1|K3|A|1087
7A01|1|K3|U|1088
7A01|1|K3|G|1089
*
7A01|1|K3|U|1160
7A01|1|K3|U|1161
7A01|1|K3|C|1162

Current chains

Chain K3
18S RIBOSOMAL RNA

Nearby chains

Chain F3
ribosomal protein uS15
Chain I2
ribosomal protein eL43
Chain J5
Ribosomal protein S15a
Chain O3
40S RIBOSOMAL PROTEIN ES26
Chain T3
Ribosomal protein S23
Chain X3
60s ribosomal protein l41
Chain a5
Uncharacterized protein
Chain e2
Large subunit ribosomal RNA; LSU rRNA

Coloring options:

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