J4_7A01_002
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 7A01|1|K3|A|672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|G|665
7A01|1|K3|U|666
7A01|1|K3|U|667
7A01|1|K3|A|668
7A01|1|K3|A|669
7A01|1|K3|A|670
7A01|1|K3|A|671
7A01|1|K3|A|672
7A01|1|K3|G|673
*
7A01|1|K3|C|1032
7A01|1|K3|G|1033
7A01|1|K3|A|1034
7A01|1|K3|A|1035
7A01|1|K3|A|1036
7A01|1|K3|G|1037
*
7A01|1|K3|C|1078
7A01|1|K3|C|1079
7A01|1|K3|A|1080
7A01|1|K3|U|1081
7A01|1|K3|A|1082
7A01|1|K3|A|1083
7A01|1|K3|A|1084
7A01|1|K3|C|1085
7A01|1|K3|G|1086
7A01|1|K3|A|1087
7A01|1|K3|U|1088
7A01|1|K3|G|1089
*
7A01|1|K3|U|1160
7A01|1|K3|U|1161
7A01|1|K3|C|1162
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain I2
- ribosomal protein eL43
- Chain J5
- Ribosomal protein S15a
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain T3
- Ribosomal protein S23
- Chain X3
- 60s ribosomal protein l41
- Chain a5
- Uncharacterized protein
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: