J4_7A01_006

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7A01|1|e2|A|2366, 7A01|1|e2|U|2369, 7A01|1|e2|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|2365
7A01|1|e2|A|2366
7A01|1|e2|A|2367
7A01|1|e2|A|2368
7A01|1|e2|U|2369
7A01|1|e2|A|2370
7A01|1|e2|U|2371
*
7A01|1|e2|A|2389
7A01|1|e2|G|2390
7A01|1|e2|G|2391
*
7A01|1|e2|C|2824
7A01|1|e2|A|2825
7A01|1|e2|U|2826
7A01|1|e2|G|2827
7A01|1|e2|U|2828
7A01|1|e2|U|2829
*
7A01|1|e2|A|3856
7A01|1|e2|G|3857

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain H2

uL22

Chain u2

eL31