J4_7A01_010

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGC*GCGGG*CUCUUAAGGUAG*UGAAUG

Length

27 nucleotides

Bulged bases

7A01|1|e2|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|3696
7A01|1|e2|U|3697
7A01|1|e2|G|3698
7A01|1|e2|C|3699
*
7A01|1|e2|G|3751
7A01|1|e2|C|3752
7A01|1|e2|G|3753
7A01|1|e2|G|3754
7A01|1|e2|G|3755
*
7A01|1|e2|C|3769
7A01|1|e2|U|3770
7A01|1|e2|C|3771
7A01|1|e2|U|3772
7A01|1|e2|U|3773
7A01|1|e2|A|3774
7A01|1|e2|A|3775
7A01|1|e2|G|3776
7A01|1|e2|G|3777
7A01|1|e2|U|3778
7A01|1|e2|A|3779
7A01|1|e2|G|3780
*
7A01|1|e2|U|3814
7A01|1|e2|G|3815
7A01|1|e2|A|3816
7A01|1|e2|A|3817
7A01|1|e2|U|3818
7A01|1|e2|G|3819

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

Uncharacterized protein

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41