J4_7A01_012

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

7A01|1|e2|A|4589, 7A01|1|e2|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7A01_012 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.1459

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7A01|1|e2|G|4587
7A01|1|e2|U|4588
7A01|1|e2|A|4589
7A01|1|e2|A|4590
*
7A01|1|e2|U|4620
7A01|1|e2|C|4621
*
7A01|1|e2|G|4676
7A01|1|e2|U|4677
7A01|1|e2|G|4678
*
7A01|1|e2|C|4712
7A01|1|e2|G|4713
7A01|1|e2|C|4714
7A01|1|e2|C|4715

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14

Chain w2

60S RIBOSOMAL PROTEIN UL13