J4_7A09_004
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7A09|1|f|U|8, 7A09|1|f|U|47, 7A09|1|f|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7A09_004 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.2275
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7A09|1|f|G|7
7A09|1|f|U|8
7A09|1|f|A|9
7A09|1|f|G|10
*
7A09|1|f|U|25
7A09|1|f|G|26
7A09|1|f|C|27
*
7A09|1|f|G|43
7A09|1|f|A|44
7A09|1|f|G|45
7A09|1|f|G|46
7A09|1|f|U|47
7A09|1|f|C|48
7A09|1|f|G|49
*
7A09|1|f|C|65
7A09|1|f|C|66
Current chains
- Chain f
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Eukaryotic translation initiation factor 2 subunit 2
- Chain O
- Eukaryotic translation initiation factor 2 subunit 1
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