J4_7A0S_002

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7A0S|1|X|C|308
7A0S|1|X|G|309
7A0S|1|X|A|310
7A0S|1|X|A|311
7A0S|1|X|G|312
*
7A0S|1|X|C|327
7A0S|1|X|A|328
7A0S|1|X|C|329
7A0S|1|X|C|330
*
7A0S|1|X|G|334
7A0S|1|X|A|335
7A0S|1|X|A|336
*
7A0S|1|X|U|348
7A0S|1|X|G|349
7A0S|1|X|U|350
7A0S|1|X|A|351
7A0S|1|X|G|352

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24