J4_7A5I_004
3D structure
- PDB id
- 7A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitoribosome with A- P-and E-site mt-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7A5I|1|A3|U|2634
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7A5I_004 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.1591
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7A5I|1|A3|C|2544
7A5I|1|A3|U|2545
7A5I|1|A3|G|2546
*
7A5I|1|A3|C|2569
7A5I|1|A3|C|2570
*
7A5I|1|A3|G|2587
7A5I|1|A3|C|2588
7A5I|1|A3|A|2589
7A5I|1|A3|A|2590
7A5I|1|A3|A|2591
7A5I|1|A3|G|2592
7A5I|1|A3|G|2593
7A5I|1|A3|U|2594
7A5I|1|A3|A|2595
7A5I|1|A3|G|2596
*
7A5I|1|A3|U|2630
7A5I|1|A3|G|2631
7A5I|1|A3|A|2632
7A5I|1|A3|A|2633
7A5I|1|A3|U|2634
7A5I|1|A3|G|2635
Current chains
- Chain A3
- 16S rRNA
Nearby chains
- Chain 94
- Transfer RNA; tRNA
- Chain A6
- Small subunit ribosomal RNA; SSU rRNA
- Chain D3
- 39S ribosomal protein L2, mitochondrial
- Chain d6
- Aurora kinase A-interacting protein
Coloring options: