J4_7A5I_007
3D structure
- PDB id
- 7A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitoribosome with A- P-and E-site mt-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 7A5I|1|A6|A|946, 7A5I|1|A6|A|1107, 7A5I|1|A6|C|1110, 7A5I|1|A6|C|1112
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7A5I_007 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.244
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7A5I|1|A6|G|945
7A5I|1|A6|A|946
7A5I|1|A6|G|947
*
7A5I|1|A6|C|1056
7A5I|1|A6|A|1057
7A5I|1|A6|A|1058
7A5I|1|A6|U|1059
7A5I|1|A6|A|1060
7A5I|1|A6|G|1061
*
7A5I|1|A6|C|1102
7A5I|1|A6|C|1103
7A5I|1|A6|C|1104
7A5I|1|A6|U|1105
7A5I|1|A6|A|1106
7A5I|1|A6|A|1107
7A5I|1|A6|A|1108
7A5I|1|A6|C|1109
7A5I|1|A6|C|1110
7A5I|1|A6|U|1111
7A5I|1|A6|C|1112
7A5I|1|A6|A|1113
*
7A5I|1|A6|U|1136
7A5I|1|A6|C|1137
Current chains
- Chain A6
- 12S rRNA
Nearby chains
- Chain J6
- 28S ribosomal protein S12, mitochondrial
- Chain L6
- 28S ribosomal protein S15, mitochondrial
- Chain N6
- 28S ribosomal protein S17, mitochondrial
- Chain Q6
- 28S ribosomal protein S21, mitochondrial
- Chain T6
- 28S ribosomal protein S25, mitochondrial
- Chain c6
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain d6
- Aurora kinase A-interacting protein
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