J4_7AC7_002

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AC7_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0864

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7AC7|1|1|G|297
7AC7|1|1|G|298
7AC7|1|1|A|299
7AC7|1|1|A|300
7AC7|1|1|G|301
*
7AC7|1|1|C|316
7AC7|1|1|G|317
7AC7|1|1|C|318
7AC7|1|1|G|319
*
7AC7|1|1|C|323
7AC7|1|1|A|324
7AC7|1|1|G|325
*
7AC7|1|1|C|337
7AC7|1|1|G|338
7AC7|1|1|U|339
7AC7|1|1|A|340
7AC7|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24