J4_7ACR_002

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ACR_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.129

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7ACR|1|1|G|297
7ACR|1|1|G|298
7ACR|1|1|A|299
7ACR|1|1|A|300
7ACR|1|1|G|301
*
7ACR|1|1|C|316
7ACR|1|1|G|317
7ACR|1|1|C|318
7ACR|1|1|G|319
*
7ACR|1|1|C|323
7ACR|1|1|A|324
7ACR|1|1|G|325
*
7ACR|1|1|C|337
7ACR|1|1|G|338
7ACR|1|1|U|339
7ACR|1|1|A|340
7ACR|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24