J4_7AS8_009

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7AS8|1|A|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AS8_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1002

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7AS8|1|A|C|1862
7AS8|1|A|U|1863
7AS8|1|A|G|1864
*
7AS8|1|A|C|1934
7AS8|1|A|G|1935
*
7AS8|1|A|C|1953
7AS8|1|A|C|1954
7AS8|1|A|U|1955
7AS8|1|A|A|1956
7AS8|1|A|A|1957
7AS8|1|A|G|1958
7AS8|1|A|G|1959
7AS8|1|A|U|1960
7AS8|1|A|A|1961
7AS8|1|A|G|1962
*
7AS8|1|A|C|1996
7AS8|1|A|G|1997
7AS8|1|A|A|1998
7AS8|1|A|A|1999
7AS8|1|A|A|2000
7AS8|1|A|G|2001

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Uncharacterized protein YabO

Chain 2

Transfer RNA; tRNA

Chain E

50S ribosomal protein L2