J4_7ASM_002

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASM_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.0871

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7ASM|1|A|C|340
7ASM|1|A|G|341
7ASM|1|A|A|342
7ASM|1|A|A|343
7ASM|1|A|U|344
*
7ASM|1|A|A|359
7ASM|1|A|A|360
7ASM|1|A|U|361
7ASM|1|A|C|362
*
7ASM|1|A|G|366
7ASM|1|A|A|367
7ASM|1|A|A|368
*
7ASM|1|A|U|380
7ASM|1|A|G|381
7ASM|1|A|U|382
7ASM|1|A|A|383
7ASM|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24