J4_7AZS_009

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

7AZS|1|23SA|G|1320, 7AZS|1|23SA|A|1321, 7AZS|1|23SA|U|1322, 7AZS|1|23SA|A|1324, 7AZS|1|23SA|G|1697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_009 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.061

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7AZS|1|23SA|C|1319
7AZS|1|23SA|G|1320
7AZS|1|23SA|A|1321
7AZS|1|23SA|U|1322
7AZS|1|23SA|A|1323
7AZS|1|23SA|A|1324
7AZS|1|23SA|A|1325
*
7AZS|1|23SA|U|1343
7AZS|1|23SA|C|1344
*
7AZS|1|23SA|G|1695
7AZS|1|23SA|C|1696
7AZS|1|23SA|G|1697
7AZS|1|23SA|C|1698
*
7AZS|1|23SA|G|2034
7AZS|1|23SA|G|2035

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L22A

50S ribosomal protein L22

Chain L32A

50S ribosomal protein L32