J4_7AZS_018

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0896

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|23SB|C|322
7AZS|1|23SB|G|323
7AZS|1|23SB|A|324
7AZS|1|23SB|A|325
7AZS|1|23SB|G|326
*
7AZS|1|23SB|C|341
7AZS|1|23SB|G|342
7AZS|1|23SB|C|343
7AZS|1|23SB|C|344
*
7AZS|1|23SB|G|348
7AZS|1|23SB|A|349
7AZS|1|23SB|G|350
*
7AZS|1|23SB|C|362
7AZS|1|23SB|G|363
7AZS|1|23SB|U|364
7AZS|1|23SB|A|365
7AZS|1|23SB|G|366

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L24B

50S ribosomal protein L24

Chain L4B

50S ribosomal protein L4