J4_7AZS_019
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 7AZS|1|23SB|G|1320, 7AZS|1|23SB|A|1321, 7AZS|1|23SB|U|1322, 7AZS|1|23SB|A|1324, 7AZS|1|23SB|G|1697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AZS_019 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0643
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AZS|1|23SB|C|1319
7AZS|1|23SB|G|1320
7AZS|1|23SB|A|1321
7AZS|1|23SB|U|1322
7AZS|1|23SB|A|1323
7AZS|1|23SB|A|1324
7AZS|1|23SB|A|1325
*
7AZS|1|23SB|U|1343
7AZS|1|23SB|C|1344
*
7AZS|1|23SB|G|1695
7AZS|1|23SB|C|1696
7AZS|1|23SB|G|1697
7AZS|1|23SB|C|1698
*
7AZS|1|23SB|G|2034
7AZS|1|23SB|G|2035
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain L17B
- 50S ribosomal protein L17
- Chain L22B
- 50S ribosomal protein L22
- Chain L32B
- 50S ribosomal protein L32
Coloring options: