J4_7AZS_022

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

7AZS|1|23SB|A|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_022 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1777

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7AZS|1|23SB|G|1493
7AZS|1|23SB|A|1494
7AZS|1|23SB|C|1495
*
7AZS|1|23SB|G|1516
7AZS|1|23SB|C|1517
*
7AZS|1|23SB|G|1574
7AZS|1|23SB|G|1575
*
7AZS|1|23SB|C|1596
7AZS|1|23SB|C|1597

Current chains

Chain 23SB

23S rRNA

Nearby chains