J4_7AZS_024
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7AZS|1|23SB|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AZS_024 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0734
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7AZS|1|23SB|U|1867
7AZS|1|23SB|U|1868
7AZS|1|23SB|G|1869
*
7AZS|1|23SB|C|1930
7AZS|1|23SB|G|1931
*
7AZS|1|23SB|C|1949
7AZS|1|23SB|C|1950
7AZS|1|23SB|U|1951
7AZS|1|23SB|A|1952
7AZS|1|23SB|A|1953
7AZS|1|23SB|G|1954
7AZS|1|23SB|G|1955
7AZS|1|23SB|U|1956
7AZS|1|23SB|A|1957
7AZS|1|23SB|G|1958
*
7AZS|1|23SB|C|1992
7AZS|1|23SB|G|1993
7AZS|1|23SB|A|1994
7AZS|1|23SB|A|1995
7AZS|1|23SB|A|1996
7AZS|1|23SB|A|1997
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain 16SB
- Small subunit ribosomal RNA; SSU rRNA
- Chain L2B
- 50S ribosomal protein L2
- Chain PSIB
- Transfer RNA; tRNA
Coloring options: