J4_7AZS_033

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

A(4SU)AG*CAGG*CCGUGUCC*GU

Length

18 nucleotides

Bulged bases

7AZS|1|TRNA|G|46, 7AZS|1|TRNA|U|47

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_033 not in the Motif Atlas

Homologous match to J4_5WWT_001

Geometric discrepancy: 0.4797

The information below is about J4_5WWT_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_65285.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7AZS|1|TRNA|A|7
7AZS|1|TRNA|4SU|8
7AZS|1|TRNA|A|9
7AZS|1|TRNA|G|10
*
7AZS|1|TRNA|C|25
7AZS|1|TRNA|A|26
7AZS|1|TRNA|G|27
7AZS|1|TRNA|G|28
*
7AZS|1|TRNA|C|42
7AZS|1|TRNA|C|43
7AZS|1|TRNA|G|44
7AZS|1|TRNA|U|45
7AZS|1|TRNA|G|46
7AZS|1|TRNA|U|47
7AZS|1|TRNA|C|48
7AZS|1|TRNA|C|49
*
7AZS|1|TRNA|G|65
7AZS|1|TRNA|U|66

Current chains

Chain TRNA

Phe-tRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA

Chain L18A

50S ribosomal protein L18