J4_7B0Y_002
3D structure
- PDB id
- 7B0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a transcribing RNA polymerase II-U1 snRNP complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGG*CCA*UGCGAU*ACUCGAC
- Length
- 19 nucleotides
- Bulged bases
- 7B0Y|1|a|G|117, 7B0Y|1|a|A|118
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7B0Y|1|a|G|15
7B0Y|1|a|G|16
7B0Y|1|a|G|17
*
7B0Y|1|a|C|47
7B0Y|1|a|C|48
7B0Y|1|a|A|49
*
7B0Y|1|a|U|90
7B0Y|1|a|G|91
7B0Y|1|a|C|92
7B0Y|1|a|G|93
7B0Y|1|a|A|94
7B0Y|1|a|U|95
*
7B0Y|1|a|A|113
7B0Y|1|a|C|114
7B0Y|1|a|U|115
7B0Y|1|a|C|116
7B0Y|1|a|G|117
7B0Y|1|a|A|118
7B0Y|1|a|C|119
Current chains
- Chain a
- U1 snRNA
Nearby chains
- Chain P
- 145-nt RNA
- Chain b
- U1 small nuclear ribonucleoprotein 70 kDa
- Chain e
- Small nuclear ribonucleoprotein Sm D2
- Chain i
- Small nuclear ribonucleoprotein Sm D3
- Chain j
- Small nuclear ribonucleoprotein-associated protein
- Chain k
- Small nuclear ribonucleoprotein Sm D1
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