J4_7B5K_016
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUAG*CGC*GAGGUCG*UCA
- Length
- 18 nucleotides
- Bulged bases
- 7B5K|1|x|U|8, 7B5K|1|x|U|48, 7B5K|1|x|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7B5K_016 not in the Motif Atlas
- Homologous match to J4_4WT8_030
- Geometric discrepancy: 0.2484
- The information below is about J4_4WT8_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7B5K|1|x|U|6
7B5K|1|x|A|7
7B5K|1|x|U|8
7B5K|1|x|A|9
7B5K|1|x|G|10
*
7B5K|1|x|C|26
7B5K|1|x|G|27
7B5K|1|x|C|28
*
7B5K|1|x|G|44
7B5K|1|x|A|45
7B5K|1|x|G|46
7B5K|1|x|G|47
7B5K|1|x|U|48
7B5K|1|x|C|49
7B5K|1|x|G|50
*
7B5K|1|x|U|66
7B5K|1|x|C|67
7B5K|1|x|A|68
Current chains
- Chain x
- P-site Isoleucine tRNA (77-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain z
- Transfer RNA; tRNA
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