3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
7B7D|1|2|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7B7D_001 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.1145
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7B7D|1|2|C|99
7B7D|1|2|A|100
7B7D|1|2|U|101
7B7D|1|2|U|102
7B7D|1|2|A|103
7B7D|1|2|A|104
7B7D|1|2|A|105
7B7D|1|2|U|106
7B7D|1|2|C|107
*
7B7D|1|2|G|307
7B7D|1|2|C|308
7B7D|1|2|C|309
*
7B7D|1|2|G|357
7B7D|1|2|U|358
7B7D|1|2|A|359
7B7D|1|2|A|360
7B7D|1|2|C|361
*
7B7D|1|2|G|383
7B7D|1|2|G|384

Current chains

Chain 2
18S rRNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain V
40S ribosomal protein S8-A
Chain X
40S ribosomal protein S11-A
Chain c
40S ribosomal protein S23-A

Coloring options:


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